Bioprocesses and downstream processing
ChE-437
Exam preparation: Q&A session (June 26, 2025)
This session is for you!
In case you have questions about the course content, the examination material or what will be expected from you please join us, raise your hand and ask!
We will do our best to give you the information you might be missing
- Link to the Q&A session of June 27, 2025 (1:00 pm) (URL)
- Forum for your questions (Forum)
- Mock exam DSP Part (File)
February 18 (M. Zinn)
Fermentation basics (Part 1)
- Drivers of biotechnology
- The cell
- Preservation of cells
- Batch culture
- Medium design
- Bioprocess Engineering (Part 1) (File)
- Q&A for lecture 1 (Forum)
- Solutions Tasks 1-11 (File)
- Paper selection (Folder)
- Paper Presentations (team selection) (URL)
February 27 (M. Zinn)
Fermentation basics (Part 2)
- Batch calculations
- Fed-batch applications
- Introduction chemostat
(optional start of Part 3)
March 5 (M. Zinn)
Fermentation basics (Part 3)
- Continuous culture
- Maintenance energy
- Multiple nutrient limited growth conditions
- Fermentation Part 3 (File)
- Solutions of tasks 5-10 (File)
- Solutions Tasks 11-15 (File)
- Solutions to tasks 16-23 (File)
Excursion to Sion (HES-SO labs)
Agenda:
Visit of labs in upstream (M. Zinn) and downstream processing (S. Crelier)
Questions concerning paper presentations
March 19 (M. Zinn)
Bioprocess paper studies
- 5 Paper presentations by Master students
March 25 (K. Eyer)
Introduction and Basics of Bioreactors / Fermentors
- Background
- What are drug products?
- History of modern biopharmaceutical manufacturing
- Using cells to manufacture chemicals
- The birth of modern biopharmaceuticals
- Introduction Bioreactor Technology (File)
- Setting the basics (File)
- Definitions of Biotechnology (File)
- Colors of Biotechnology (File)
- Keys for Bioreactor Selection (File)
- Bioreactors - Technology & Design Analysis (File)
- Different Types of Bioreactors in Bioprocesses (File)
- Q&A for lecture 1 (Forum)
April 1 (K. Eyer)
- Chose of a Bioreactor / Fermenter
- Characterization of biological reactor systems
- Different types of reactor systems
- Basic geometry of reactors and some basic calculations
- Choice of a Bioreactor / Fermenter (File)
- Bioreactor Design - Summary (File)
- Single-use disposable technology (File)
- Single Use Technology and Equipment (File)
- Bioreactors and fermenters: powerfool tools (File)
- Bioreactor Design for Chemical Engineers (File)
- Q&A for lecture 2 (Forum)
- Multiple Choice Questions (File)
April 8 (K. Eyer)
- Transfer phenomena
- Bioprocess mass transfer
- Oxygen Transfer
- Agitator design and operation
- Mixing
- Power Input
- Transfer Phenomena in Reactors (File)
- Solutions Examples (File)
- Sterilisation of a Bioreactor / Fermentor (File)
April 15 (K. Eyer)
- Scale-up of bioreactors / fermenters
- Sterilisation of Bioreactors / Fermentors
- SUT (Single Use Technology)
- Economic analysis
- Process integration and Scale-up (File)
- Scale-up in bio-chemical processes - article (File)
- Scale-Up of Bioreactors and Bioprocesses (File)
- Solution Example 2 Scale-up (File)
- some more solutions (File)
- Death kinetics example (Example 1 Lecture Sterilisation) (File)
- examples within the course (File)
April 29, 2025 (S. Crelier)
Anatomy of a bioprocess and overview of DSP in biotechnology
Which biomolecules do we purify?
Production of mAbs. Some analytical aspects.
- DSP 2024 Lecture 1 - Intro and mAb production (File)
- International Biopharmaceutical Industry Vol. 2, Issue 2, 2019 (File)
- Video on Avastin production at Roche (File)
- Protein Assay Handbook (File)
- Papers and group composition for the May 27 presentations (Folder)
May 6, 2025 (S. Crelier)
The separation of the biomass from the fermentation medium is a mandatory step in DSP
In this lecture we will discuss centrifugation and filtration
- DSP 2025 Lecture 2 - Solid-Liquid Separation (File)
- DSP Exercises Solid Liquid Separations (File)
- DSP Corrected Exercises Solid Liquid Separations (File)
- Tubular Bowl Centrifuge (File)
- CHO Filtration Raw Data (File)
- Corrected Exercise on CHO filtration (File)
- McCarthy 1998 Yeast Cake Resistance Pressure (File)
- Video - Disc Stack Centrifuge (File)
- Video - Principle of depth filtration (File)
- Video - Depth filtration of fermentation medium (File)
- Video - Plate and frame press filter (File)
- Video - Agitated Nutsche Filter Dryer (File)
- Data Sheet Pall Depth Filters (File)
May 13, 2025 (S. Crelier)
This week we will discuss membrane techniques: micro-, ultra-, nanofiltration and reverse osmosis
- DSP 2025 Lecture 3 - Membrane techniques (File)
- Video: Spectrum - cassette vs hollow fibers (File)
- Video: Repligen - Flat sheet membrane TFF (File)
- Video: Repligen - hollow fiber TFF (File)
May 20, 2025 (S. Crelier)
Chromatography is probably the golden standard approach when it comes to preparative protein purification, be it at lab or production scales. But wait, which type of chromatography are we talking about? How do you assess the performance of your resin/columns? Follow the guide, please!
- DSP 2023 Lecture 4 - Adsorption and chromatography (File)
- Brochure MabSelect SuRe Affinity Resin (File)
- JSR Amsphere A3 Chromatography Resin (File)
- Video Production Scale Column Packing (File)
May 27, 2025 (S. Crelier)
This section contains a few documents we will discuss during the last lecture.
The documents that will be part of the examination material will be clearly identified.
Here you will find articles on affinity chromatography and continuous chromatography that you might find useful if you get to work on such systems.
The Dossier "Cytiva Handbooks" contains a collection of very useful booklets on protein purification and the different chromatography techniques.
The video shows the basic principles behind Simulated Moving Bed Chromatography, a technology that enables continuous chromatographic separations.
In the bottom part of the section you will find three documents dedicated to viral clearance, an important step in the purification of molecules derived from mammalian cell cultures (unfortunately, we did not have enough time to cover this topic).
For the exam ... (S. Crelier)
In this section you will find a few typical DSP questions and short calculations (with answers) to help you prepare the exam of July 3.
June 20, 2024: Questions & Answers Session on Course ChE 437
In case some topics need clarifying, we will be available to answer your questions during this Zoom session