Randomness and information in biological data
BIO-369
Introduction
Dear students,
Welcome to “Randomness and information in biological data”, BIO-369! Here is some information about the organization of the course.
Problem classes take place on Monday afternoons 3:15pm-5pm in room CE1106. Lectures take place on Wednesday mornings 10:15am-12noon in room BS170.
There will be three exceptions to this regular schedule:
1- Week 1: there will be two lectures and no problem class.
2- Week 5: there will be a lecture on Monday 17/03 and a problem class on Wednesday 19/03
3- Week 11: there will be two problem classes and no lecture. This will give you more time to work on the graded numerical mini-project, which is scheduled to take place during weeks 10-11.
Material for lectures and problem classes are available on Moodle.
During problem classes, some questions are computer-based, and we strongly advise the use of Jupyter Notebooks with Python3 to solve them. There will also be a numerical mini-project that you will have to hand in using this format.
We are using Ed Discussion for class discussion outside of regular lecture hours. You are most welcome to ask questions on Ed Discussion, as well as to propose answers to other students' questions. The goal is to foster discussion between all of us, and to help you on points that are unclear. Rather than emailing questions to me or to the TAs, I encourage you to post your questions on Ed Discussion. Please follow the link below this message to access Ed Discussion.
Looking
forward to meeting you and discussing with you!
Prof.
Anne-Florence Bitbol, and TAs Cecilia Fruet, Margaret Lane, Alexandre Littiere and Anamay Samant
- Lecture 1 - typed notes (File)
- Lecture1 slides (File)
- Recording of Lecture 1 - Part 1 (URL)
- Recording of Lecture 1 - Part 2 (URL)
- Lecture 2 - typed notes (File)
- Lecture2 slides (File)
- Recording of Lecture 2 - Part 1 (URL)
- Recording of Lecture 2 - Part 2 (URL)
- Lecture 3 - typed notes (File)
- Lecture3 slides (File)
- Recording of Lecture 3 - Part 1 (URL)
- Recording of Lecture 3 - Part 2 (URL)
- Recording of Lecture 3 - Part 3 (URL)
- Problems1 (File)
- Solutions1 (File)
- Solutions1 Python.ipynb (File)
- Problems2 (File)
- Data for problems 2 - "Data3" file (File)
- Solutions2 (File)
- Solutions2 Python.ipynb (File)
- Lecture 4 - typed notes (File)
- Lecture4 slides (File)
- Recording of Lecture 4 - Part 1 (URL)
- Recording of Lecture 4 - Part 2 (URL)
- Recording of Lecture 4 - Part 3 (URL)
- Problems3 (File)
- Solutions3 (File)
- Lecture 5 - typed notes (File)
- Lecture 5 - slides (File)
- Problems4 (File)
- Solutions4 (File)
- Solutions4 Python.ipynb (File)
- Lecture 6 - typed notes (File)
- Lecture 6 slides (File)
- Recording of Lecture 6 - Part 1 (URL)
- Recording of Lecture 6 - Part 2 (URL)
- Problems5 (File)
- smFISH_data (File)
- Solutions 5 (File)
- Solutions 5 Python (File)
- Lecture 7 - typed notes (File)
- Lecture 7 slides (File)
- Recording of Lecture 7 - Part 1 (URL)
- Recording of Lecture 7 - Part 2 (URL)
- Problems6 (File)
- Data 7 (File)
- Solutions6 (File)
- Solutions6 Python.ipynb (File)
- Lecture 8 - typed notes (File)
- Lecture 8 slides (File)
- Recording of Lecture 8 - Part 1 (URL)
- Recording of Lecture 8 - Part 2 (URL)
- Recording of Lecture 8 - Part 3 (URL)
- Problems7 (File)
- crp sites.fa (File)
- Solutions7 Python.ipynb (File)
- Lecture 9 - typed notes - same as last week (lecture 8), we will continue on this (File)
- Lecture 9 slides - same as last week too (File)
- Recording of Lecture 9 (URL)
- Problems8 (File)
- Data 9 (File)
- Solutions8 (File)
- Solutions8 Python.ipynb (File)
- Lecture 10 - typed notes (File)
- Lecture 10 slides (File)
- Recording of Lecture 10 - Part 1 (URL)
- Recording of Lecture 10 - Part 2 (URL)
- Problems9 (File)
- Data 10 (File)
- Solutions9 (File)
- Solutions9 Python.ipynb (File)
- Lecture 11 - typed notes (File)
- Lecture 11 - slides (File)
- Recording of Lecture 11 - Part 1 (URL)
- Recording of Lecture 11 - Part 2 (URL)
- Problems 10 PROJECT (File)
- Project data (File)
- Lecture 12 - typed notes (File)
- Lecture12 slides (File)
- Recording of Lecture 12 - Part 1 (URL)
- Recording of Lecture 12 - Part 2 (URL)
- Problems11 (File)
- Data 11 (File)
- Solutions 11 (File)
- Solutions 11 Python (File)
- Lecture 13 - typed notes (File)
- Lecture 13 slides (File)
- Recording of Lecture 13 - Part 1 (URL)
- Recording of Lecture 13 - Part 2 (URL)
- Problems 12 (File)
- Data 12 (File)
- Solutions 12 (File)
- Solutions 12 Python (File)
- Typed notes of all lectures (File)
- Lecture 14 slides (File)
- Recording of Lecture 14 - Part 1 (URL)
- Recording of Lecture 14 - Part 2 (URL)
- MockExam (File)
- MockExamSolution (File)