Dynamical systems in biology
BIO-341
This file is part of the content downloaded from Dynamical systems in biology.
8 September - 12 September
- Blackboard notes for lecture 1 (File)
- Introductory slides for lecture 1 (File)
- Linear, autonomous, first-order ODE (File)
- Tutorials (Folder)
- Exercise Serie 1 (Folder)
- Noto - Exercise 1 (URL)
- Solution Serie 1 (Folder)
- Noto - Solution 1 (URL)
15 September - 19 September
- Blackboard notes for lecture 2 (File)
- Introductory slides for lecture 2 (File)
- Noto - Exercise 2 (URL)
- Noto - Solution 2 (URL)
- Exercise Serie 2 (Folder)
- Solution Serie 2 (Folder)
22 September - 26 September
- Blackboard notes for lecture 3 (File)
- Introductory slides for lecture 3 (File)
- C++ implementation to find the zero of a function using Newton'Raphson method (File)
- Article on Catastrophe theory in Quanta Magazine (URL)
- Noto - Exercise 3 (URL)
- Noto - Solution 3 (URL)
- Exercise Serie 3 (Folder)
- Solution Serie 3 (Folder)
29 September - 3 October
- Blackboard notes for lecture 4 (File)
- Introductory slides for lecture 4 (File)
- Noto - Exercise 4 (URL)
- Noto - Solution 4 (URL)
- C++ Runge-Kutta integration code for linear 2D system (Folder)
- Exercise Serie 4 (Folder)
- Solution Serie 4 (Folder)
- Shifting a fixed point to the origin (File)
- How to distinguish a star node from a degenerate node (File)
- Complex eigenvalues /eigenvectors (File)
6 October - 10 October
- Marks for graded exercise 1 (File)
- Graded Series 5 (Folder)
- Blackboard notes for lecture 5 (File)
- Introductory slides for lecture 5 (File)
- Solution to Graded Exercise 1 (File)
13 October - 17 October
- Lecture 6 introductory slides (File)
- Exercise Serie 6 (Folder)
- Noto - Exercise 6 (URL)
- Noto - Solution 6 (URL)
- Solution Serie 6 (Folder)
- How can there be complex trajectories if eigenvalues/eigenvectors are complex? (File)
- Blackboard notes for lecture 6 (File)
20 October - 24 October
No lecture or exercise period this week.
27 October - 31 October
- Lecture 7 introductory slides (File)
- Lecture 7 blackboard notes (File)
- Code to run the limit cycle model for multiple parameter sets (Folder)
- Gardner Paper for week 7 (File)
- Slides chap3.4 Gardner paper (File)
- Noto - Exercise 7 (URL)
- Noto - Solution 7 (URL)
- Exercise Serie 7 (Folder)
- Solution Serie 7 (Folder)
3 November - 7 November
- Noto - Exercise 8 (URL)
- Noto - Solution 8 (URL)
- Exercise Serie 8 (Folder)
- Solution Serie 8 (Folder)
- Lecture 8 blackboard notes (File)
- Lecture 8 introductory slides (File)
10 November - 14 November
- Lecture 9 introductory slides (File)
- Lecture 9 blackboard notes (File)
- Paper by Cai et al on stochastic gene expression (File)
- Paper by Elowitz et al on noisy gene expression (File)
- Exercise Serie 9 (Folder)
- Solution Serie 9 (Folder)
17 November - 21 November
- Noto - Exercises 10 (URL)
- Noto - Solution 10 (URL)
- Exercise Serie 10 (Folder)
- Solution Serie 10 (Folder)
- Week 10 introduction slides (File)
- Week 10 complement 6.2 (File)
24 November - 28 November
- Week 11: complement 6.3 (File)
- Noto - Exercise 11 (URL)
- Exercise Serie 11 (Folder)
- Solution Serie 11 (Folder)
1 December - 5 December
- Marks for Graded Exercise 2 (File)
- Graded Series 2 - week 12 (Folder)
- Lecture 12 slides (File)
- Lecture 12 blackboard notes (File)
8 December - 12 December
- Lecture 13 introductory slides (File)
- Lecture 13 blackboard notes (File)
- 3D Runge Kutta integration code (File)
- Noto - Exercise 13 (URL)
- Exercice Series 13 (Folder)
- Solutions 13 (Folder)
15 December - 19 December
Review of the course material during the lecture.
- Blackboard notes on bifurcations and phase portraits (File)
- Blackboard notes on hysteresis (File)
- Blackboard notes on forced phase oscillators (File)