Cell and developmental biology for engineers
BIO-221
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- Lecture Week 1 (final): introduction, fertilization (File)
- Movie_Human_Fertilization (File)
- Movie_Fertilization envelope in sea urchin (File)
- Exercises Week 1 (final) (File)
- Week 2 (final): symmetry breaking, cell polarity (File)
- Movie_C. elegans_polarization (File)
- Movie_Microtubule_Dynamics (File)
- Movie_Kinesin_Animation (File)
- Cytosim folder (File)
- Cytosim tutorial (File)
- Wild-type (File)
- geneA(RNAi) (File)
- geneB(RNAi) (File)
- Week 2: mystery gene corrections (File)
- Week 2: Cytosim corrections (File)
- Week 3 (final): maternal-to-zygotic transition (MZT) (File)
- Jukam et al.; 2017 (File)
- Movie_Xenopus_Embryogenesis (File)
- Movie_Drosophila_Syncitial_Stage (File)
- Week 4 (final): patterning the early embryo (File)
- ftz mRNA generation dynamics (File)
- Movie_GFP::PAR-2_GFP::SAS-7_RFP::NMY-2_C.elegans (File)
- Movie_GFP::PIE-1_C.elegans (File)
- Installation guidelines for Morphogen Jupyter notebook (File)
- Morphogen computational exercise (Folder)
- Week 5 HeadTailFrontBackLeftRight 2025 (File)
- Week 5 HeadTailFrontBackLeftRight 2025 final (File)
- BMP signaling pathway (File)
- Wnt signaling pathway (File)
- nodal cilia (File)
- nodal beads (File)
- nodal membranes (File)
- release (File)
- impact (File)
- entire zebrafish development (File)
- early zebrafish development (File)
- Week 6 Morphogenesis-Gastrulation 2025 (File)
- Week 6 Morphogenesis-Gastrulation 2025 final (File)
- mouse blastocyst movie (File)
- trunk-n-tail_rescue.mov (Text and media area)
- BIO-221 Week 5-6 exercises 2025 (File)
- Week 6 Morphogenesis-Gastrulation 2025 (File)
- Week 6 Morphogenesis-Gastrulation 2025 final (File)
- Zebrafish development (File)
- Myosin stepping (File)
- Drosophila nuclei (File)
- sea urchin gastrulation (File)
- Drosophila ventral furrow (File)
- Drosophila ventral pulses (File)
- Drosophila increased myosin activity (File)
- Drosophila germband extension (File)
- mouse blastocyst movie (File)
- BIO-221 Week 5-6 exercises 2025 (File)
- Exercises -weeks 1-4 (File)
- Exercises -weeks 1-4 (corrections) (File)
- Week 9 Fine-grained patterning 2025 student (File)
- Notch signalling movie (File)
- Receptor Tyrosine Kinase signalling pathway (File)
- Week 9 Exercise Communicating Cells (File)
- Communicating cells (Folder)
- Corrections Exercise Coupled Oscillators 2025 (File)
- Week 10 patterning a growing tissue (File)
- zebrafish segmentation (File)
- somite nuclei (File)
- cyclic gene and segment gene (File)
- zebrafish lightsheet (File)
- deltaC animation (File)
- RNA velocity introduction (File)
- Velocity perspective (File)
- Klein - Gene dynamics in single cells (File)
- La Manno et al. - 2018 - RNA velocity of single cells (File)
- Week 10 (final): stem cells, lineaging, organoids (File)
- Crypt animation Clevers lab (File)
- Mini-gut organoid with proper geometry (File)
- RNA velocity exercises (File)
- RNA velocity corrections (File)
- Fides Zenk -guest lecture (File)
- Week 11 (final): programmed cell death, regeneration (File)
- Movie_C. elegans_Embryogenesis (File)
- Bosser and Galliot, 2012 (Hydra experiments 101) (File)
- Hydra experiments (File)
- Week 13 migration and germ cells (File)
- 1172046s9.mov (Text and media area)
- 2014 Nikon Small World in Motion Competition - Fir... (Text and media area)
- Active migration of zebrafish PGCs (primordial ger... (Text and media area)
- Chemotactic Dictyostelium cell in cAMP gradient [3... (Text and media area)
- Crawling Neutrophil Chasing a Bacterium [360p].mp4 (Text and media area)
- DictyosteliumChasePipette.m4v (Text and media area)
- P granule localization in GFP__PGL-1 embryo [360p]... (Text and media area)
- The Shigella flexneri actin tail in untreated cond... (Text and media area)
- Overview of lateral line migration in zebrafish [7... (Text and media area)
- germcellorientation.mp4 (Text and media area)
- Listeria monocytogenes [360p].mp4 (Text and media area)
- Migration exercise (Folder)
- Hydra_results (File)
- Questions to further prepare for second continuous control (File)
Congé - Lundi de Pentecôte