Biophysics : physics of biological systems
PHYS-302
This file is part of the content downloaded from Biophysics : physics of biological systems.
- 2020 09 15 Biophysics lecture 1 (File)
- Homework Set 1, problems 1-5, due: 10.10.2024 (URL)
- relevant MIT OCW notes on the Master equation (URL)
- Lecture01_cropped.mp4 (Text and media area)
- E. coli genome for Assignment 1 Problem 2 and 4 (File)
- 2020 09 22 Biophysics class 2 (File)
- Lecture02_cropped.mp4 (Text and media area)
- Matlab code for simulating the Wright-Fisher model (File)
- 2020 09 29 Biophysics Class 3 - factor of "2" errors on pages 3 and 4 (File)
- relevant MIT OCW notes on the forward Kolmogorov equation (URL)
- Lecture03_cropped.mp4 (Text and media area)
- Iram et al. Controlling the speed and trajectory evolution counterdiabatic driving Nature Physics 2021 (File)
- 2020 10 13 Biophysics Class 4 (File)
- Homework set 2, due: 31.10.2024 (File)
- relevant MIT OCW notes on the backward Kolmogorov equation (URL)
- Lecture04_cropped.mp4 (Text and media area)
- 2020 10 20 Biophysics Class 5 (File)
- relevant MIT OCW notes on sequence alignments (URL)
- Lecture05_cropped.mp4 (Text and media area)
- 2020 10 27 Biophysics Class 6 (File)
- Homework Set 3, solve all problems except 5 d), due: 14.11.2024 (URL)
- relevant MIT OCW notes on networks (URL)
- Lecture06_cropped.mp4 (Text and media area)
- Matlab code for generating Erdos-Renyi networks (File)
- 2020 11 17 Biophysics class 8 (File)
- relevant MIT OCW notes on Hopfield networks (URL)
- Lecture08_cropped.mp4 (Text and media area)
- homework Langevin, Due: 05.12.2024 (File)
- Matlab code for simulating Hopfield network flows - main file (File)
- Matlab code for simulating Hopfield network flows - required supplementary file (File)
- Microtubule dynamics 1 (URL)
- Microtubule dynamics 2 (URL)
- relevant MIT OCW notes on microtubule instabilities (URL)
- 2020 11 24 Biophysics Class 9 (File)
- Lecture09_cropped.mp4 (Text and media area)
- Murugan Huse Leibler Speed dissipation error in kinetic proofreading PNAS 2012 (File)
- Synchronization of metronomes (URL)
- A video about fireflies that I found confusing but that had nice shots and music (URL)
- Firefly synchronization - video is a little bit long but nice (URL)
- relevant MIT OCW notes on the Kuramoto model (URL)
- Lecture10_cropped.mp4 (Text and media area)
- 2020 12 01 Biophysics Class 10 (File)
- Matlab code for simulating the Kuramoto model - main file (File)
- Matlab code for simulating the Kuramoto model - required supplementary file (File)
- TED talk about Turing patterns (URL)
- About Turing and his eponymous patterns (URL)
- relevant MIT OCW notes on dynamical systems (URL)
- relevant MIT OCW notes on Turing patterning (URL)
- Lecture11_cropped.mp4 (File)
- 2020 12 08 Biophysics Class 11 (File)
- homework Hopfield network, Due: 22.12.2022 (File)
- Marcon_Sharpe_Turing_patterns_in_development_CurrOpinGenDev_2012 (File)
- Matlab code for simulating the Turing model - main file (File)
- Matlab code for simulating the Turing model - required supplementary file (File)
- Kinetic proofreading on wikipedia (URL)
- Lecture12_cropped.mp4 (Text and media area)
- 2020 12 15 Biophysics Class 12 (File)