Scientific literature analysis in neuroscience
BIOENG-451
This file is part of the content downloaded from Scientific literature analysis in neuroscience.
General information
This course starts on September 11th 2024.
Classes will generally take place Wednesdays at 08h15 in CO 121.
The first class (September, 11th) will take place at 08:15 precisely!
If you have any questions, contact the TA:Alessandro Valente - alessandro.valente@epfl.ch
- Forum (Forum)
- Calendar (File)
- Journal Club (JC) Format and Guidelines (Page)
- Evaluation Criteria for Journal Clubs (File)
- Note on feedback (Chat)
- Classical Anatomical Atlas of Mouse Development - Kaufmann (URL)
- Allen Developmental Brain Atlas - interactive (URL)
- JC sessions group calendar (File)
- Miniproject group choice (Group choice)
- Example of Peer Review #1 for miniproject (File)
- Example of Peer Review #2 (ignore comments from reviewer 1) (File)
11th September - Course introduction and critical paper reading
Course presentation - [Slides below]
Lecture - Critical Paper reading - [Slides below]
18th September - Lecture about neural development
Lecture - Intro to Neurodevelopment - [Slides will be updated soon]
25th September - Lecture about modelling human brain development
Paper to read for the Journal Club Mock, Barnad et al. 2020, download below.
- Barnat,Capizzi,Aparicio et al.,2020 (File)
- Reviews - Modeling human brain development and disease (Folder)
- Example of Miniproject Task 1 (File)
- Paper of example of Miniproject Task 1 (File)
2nd October - Journal Club Mock and orientation on Mini-projects
- Miniprojects - Peer Review (Folder)
- Miniprojects - Methods (Folder)
- Mock JC _ Presentation and script. (Folder)
- Assignement description - Miniproject - 2024 (File)
9th October - Papers 1 and 2 about "Patterning and Gene Regulation"
- Paper 1 - Group 1 (File)
- Paper 2 - Group 2 (File)
- Reviews on Brain Development and Patterning (Folder)
- Questions for discussants BIOENG451 - JC – 09.10.2024 (File)
16th October - Papers 3 and 4 about "Patterning and Gene Regulation"
- Paper 3 - Group 1 (File)
- Paper 4 - Group 2 (File)
- Questions for discussants BIOENG451 - JC – 16.10.2024 (File)
30th October - Papers 5 and 6 about "Neurogenesis and Lineages"
Papers titles (and files) will be released on the 4th of October
- Paper 5 - Group 1 (File)
- Paper 6 - Group 2 (File)
- Reviews on Neurogenesis and tracing (Folder)
- Questions for discussants_BIOENG451_JC_30.10.2024 .pdf (File)
6th November – Papers 7-8 of Migration and Synaptogenesis
Papers titles (and files) will be released on the 25th of October
- Paper 7 group 1 (File)
- Paper 8 group 2 (File)
- Reviews - Neuronal migration and synaptogenesis (Folder)
- Questions for discussants_BIOENG451_JC_06.11.2024 .pdf (File)
13th November - Paper 9 and 10 - Neuronal migration and activity
- Paper 9 group 1 (File)
- Paper 10 group 2 (File)
- Questions_for_discussants_BIOENG451_JC_13.11.2024 (File)
20th November - Paper 11 and 12 - Brain development and evolution
27th November - Papers 13-14 of Human development and in vitro models
Papers titles (and files) will be released on the 8th of November
- Paper 13 group 1 (File)
- Paper 14 group 2 (File)
- Reviews - Human brain development and in vitro model (Folder)
- Questions for discussants_BIOENG451_JC_13.11.2024 .pdf (File)