Mathematical methods for neuroscience
BIO-612
This file is part of the content downloaded from Mathematical methods for neuroscience.
Projects
- Projects information (File)
- Decide on group projects (Assignment)
- Projects ideas (File)
- Draft projects submission (Assignment)
- Final projects submission (Assignment)
21 February - 27 February
- NeuroMathematics #1: Introduction (File)
- Introduction survey (URL)
- The Roles of Statistics in Human Neuroscience (Chen 2019) (File)
28 February - 6 March
7 March - 13 March
- Exercises #2 (Assignment)
- NeuroMathematics #3: Basic neuroscience (File)
- Synaptic Connectivity and Neuronal Morphology (File)
14 March - 20 March
- Exercise #3 (Assignment)
- NeuroMathematics #4: Basic neuroscience (File)
- Dendrites: bug or feature? (File)
- Are Dendrites Conceptually Useful? (File)
- Impact of Active Dendrites and Structural Plasticity on the Memory Capacity of Neural Tissue (File)
21 March - 27 March
- Exercises #4 (Assignment)
- NeuroMathematics #5: Machine learning (File)
- New insights into the classification and nomenclature of cortical GABAergic interneurons (File)
- A Systematic Evaluation of Interneuron Morphology Representations for Cell Type Discrimination (File)
- Exercises #4 dataset (File)
28 March - 3 April
- Exercises #5 (Assignment)
- NeuroMathematics #6: Machine learning II (File)
- Phenotypic variation of transcriptomic cell types in mouse motor cortex (File)
- Sparse reduced-rank regression for exploratory visualisation of paired multivariate data (File)
4 April - 10 April
- Exercises #6 (Assignment)
- NeuroMathematics #7: Algebraic Topology (File)
- Extracting insights from the shape of complex data using topology (File)
- Graph A (File)
- Graph B (File)
- Graph C (File)
- Graphs (File)
18 April - 24 April
- NeuroMathematics #8: Classic topology Applications (File)
- Exercises #7 (Assignment)
- Exercises #7 (version 2) (Assignment)
- Cell Groups Reveal Structure of Stimulus Space (File)
- Clique topology reveals intrinsic geometric structure in neural correlations (File)
- Cliques of Neurons Bound into Cavities Provide a Missing Link between Structure and Function (File)
25 April - 1 Mai
- NeuroMathematics #9: Topological Representations (File)
- Persistence images (File)
- Persistence Landscapes (File)
- Persistence Silhouette (File)
2 Mai - 8 Mai
- Exercises #8 (Assignment)
- NeuroMathematics #10: Topology of Neurons (File)
- Persistence vectorizations (File)
- A Topological Representation of Branching Neuronal Morphologies (File)
- Objective Morphological Classification of Neocortical Pyramidal Cells (File)
- Cortical_morphologies (File)
9 Mai - 15 Mai
- NeuroMathematics #11: Neuronal Growth (File)
- Computer generation and quantitative morphometric analysis of virtual neurons (File)
- Spatial embedding of neuronal trees modeled by diffusive growth (File)
- One Rule to Grow Them All: A General Theory of Neuronal Branching and Its Practical Application (File)
- Computational synthesis of cortical dendritic morphologies (File)
16 Mai - 22 Mai
- Projects information (File)
- NeuroMathematics #12: Graphs and Networks (File)
- Complex network measures of brain connectivity: Uses and interpretations (File)
- Rich cell-type-specific network topology in neocortical microcircuitry (File)