Neuroscience
BIO-311
Media
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 12 - Techniques - Part 2 | 2024
05.12.2024, 13:54
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 5 - Somatosensation (touch) | 2024
04.10.2024, 14:46
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 3 - Synaptic Transmission - Part 2 | 2024
26.09.2024, 14:53
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 4 - Hearing - Part 1 | 2024
03.10.2024, 12:31
BIO311: Neuroscience | Professor Pavan Ramdya (Guest - Dr. Simona Garrobio) | Unit 7 - Vision - The Retina | 2024
03.11.2024, 19:40
BIO311: Neuroscience | Professor Pavan Ramdya (Guest - Melissa Faggella) | Unit 8 - Vision - Systems and Circuits - Part 2 | 2024
08.11.2024, 09:07
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 12 - Techniques - Part 1 | 2024
05.12.2024, 13:54
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 3 - Synaptic Transmission - Part 1 | 2024
26.09.2024, 14:50
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 9 - Motor Systems - Spinal cord and Cerebellum - Part 1 | 2024
14.11.2024, 14:51
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 2 - Action Potentials - Part 1 | 2024
19.09.2024, 14:32
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 10 - Motor Systems - Cortex and Basal ganglia - Part 2 | 2024
21.11.2024, 16:21
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 13 - Neuroscience Goals Ethics & Sustainability | 2024
12.12.2024, 15:38
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 6 - Nociception (pain) - Part 1 | 2024
17.10.2024, 12:16
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 11 - Learning and Memory - Part 2 | 2024
28.11.2024, 12:49
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 9 - Motor Systems - Spinal cord and Cerebellum - Part 2 | 2024
14.11.2024, 14:51
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 4 - Hearing - Part 2 | 2024
03.10.2024, 12:30
BIO311: Neuroscience | Professor Pavan Ramdya (Guest - Melissa Faggella) | Unit 8 - Vision - Systems and Circuits - Part 1 | 2024
08.11.2024, 09:06
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 6 - Nociception (pain) - Part 2 | 2024
17.10.2024, 12:16
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 2 - Action Potentials - Part 2 | 2024
19.09.2024, 14:43
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 10 - Motor Systems - Cortex and Basal ganglia - Part 1 | 2024
21.11.2024, 16:22
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 11 - Learning and Memory - Part 1 | 2024
28.11.2024, 12:49
Media
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 12 - Techniques - Part 2 | 2024
05.12.2024, 13:54
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 5 - Somatosensation (touch) | 2024
04.10.2024, 14:46
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 3 - Synaptic Transmission - Part 2 | 2024
26.09.2024, 14:53
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 4 - Hearing - Part 1 | 2024
03.10.2024, 12:31
BIO311: Neuroscience | Professor Pavan Ramdya (Guest - Dr. Simona Garrobio) | Unit 7 - Vision - The Retina | 2024
03.11.2024, 19:40
BIO311: Neuroscience | Professor Pavan Ramdya (Guest - Melissa Faggella) | Unit 8 - Vision - Systems and Circuits - Part 2 | 2024
08.11.2024, 09:07
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 12 - Techniques - Part 1 | 2024
05.12.2024, 13:54
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 3 - Synaptic Transmission - Part 1 | 2024
26.09.2024, 14:50
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 9 - Motor Systems - Spinal cord and Cerebellum - Part 1 | 2024
14.11.2024, 14:51
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 2 - Action Potentials - Part 1 | 2024
19.09.2024, 14:32
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 10 - Motor Systems - Cortex and Basal ganglia - Part 2 | 2024
21.11.2024, 16:21
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 13 - Neuroscience Goals Ethics & Sustainability | 2024
12.12.2024, 15:38
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 6 - Nociception (pain) - Part 1 | 2024
17.10.2024, 12:16
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 11 - Learning and Memory - Part 2 | 2024
28.11.2024, 12:49
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 9 - Motor Systems - Spinal cord and Cerebellum - Part 2 | 2024
14.11.2024, 14:51
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 4 - Hearing - Part 2 | 2024
03.10.2024, 12:30
BIO311: Neuroscience | Professor Pavan Ramdya (Guest - Melissa Faggella) | Unit 8 - Vision - Systems and Circuits - Part 1 | 2024
08.11.2024, 09:06
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 6 - Nociception (pain) - Part 2 | 2024
17.10.2024, 12:16
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 2 - Action Potentials - Part 2 | 2024
19.09.2024, 14:43
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 10 - Motor Systems - Cortex and Basal ganglia - Part 1 | 2024
21.11.2024, 16:22
BIO311: Neuroscience | Professor Pavan Ramdya | Unit 11 - Learning and Memory - Part 1 | 2024
28.11.2024, 12:49
Course Syllabus
Welcome to BIO-311! 🧠Intro to Neuroscience | Fall 2024
Your head instructor is Prof. Pavan Ramdya.
You will be supported by several excellent teaching assistants (TAs): Melissa Faggella, Amin Khan, Claire Friedrich, Oriane Petit-Phar
NOTE: If you have a scheduling conflict or no biology background consider the new course:
"BIOENG-310: Neuroscience foundations for engineers" offered in the Spring
What is the goal?
The course is organized around Units. These units are designed for you to learn about neuroscience from a "bottom-up" perspective - how the core units of the brain--the neuron--work and are utilized across systems and behaviors.
The UNITS:Â
Unit 1:Â Introduction to Neuroscience / Neuron basics
Unit 2: The action potential
Unit 3: Synaptic transmission
Unit 4: The sense of hearing (audition)
Unit 5: The sense of touch (somatosensation)
Unit 6: The sense of pain (nociception)
Unit 7: Vision - The Retina
Unit 8: Vision - System & Circuits
Unit 9Â : Motor systems - Spinal cord and Cerebellum
Unit 10: Motor systems - Motor cortex and Basal Ganglia
Unit 11: Learning and Memory
Unit 12: Techniques in Neuroscience
Unit 13: Overview of neuroscience goals, ethics, sustainability; Careers in neuroscience discussion
DEC 19 - FINAL EXAM - (covering Units 1-13)
What do I need?Â
A desire to learn about the fundamental principles of Neuroscience!Â
Plus, you will need a digital or hardcopy of Dale Purves, George Augustine et al.: Neuroscience 6th ed. 2019.
Class format:
Thursdays 10h15 -12h: Lectures* per week (Professor led) in room SG 0211 (*note the first lecture is exceptionally on a Monday, Sept 9 in CM 1 120)
Mondays 10h15 - 12h: Exercises per week (TA led) in rooms DIA003 and DIA004 (*note the first exercise is exceptionally on a Thursday, Sept 12 in SG 0211)
Expected student activities:
Students are expected to attend lectures, actively engage in exercises, and read the corresponding chapters in the accompanying textbook *before class*. During exercises, chapter material will be discussed in depth, quizzes will be given, and simple computational examples will be introduced for analysis of the nervous system.
How are you assessed?
- 80% final exam
- 20% of your grade comes from in-class quizzes during days termed "Exercises". They are designed to be easy-to-solve if you come to the exercises (so, please come!). We will use your n-1 (i.e., one quiz is dropped, so you can miss a quiz and/or lowest graded quiz is dropped).
- Exercise worksheets are optional and not graded. They are completed in teams during the Monday exercises.
Unit 1: Introduction to Neuroscience: from cells to organisms - how do we study the brain?
For this first class, please read Purves et al. Neuroscience: Chapter 1Â pages 1-9.
- Dale Purves, George J. Augustine, David Fitzpatrick et al.: Neuroscience, International 6th edition, 2019. Language: English. Sinauer Associates
You may want to buy the book and/or obtain access to the book (library), or a *free digital copy* (here)!
Monday, Sept 9 (CM 1 120):
- Lecture - Introduction to the Course
- Break
- Lecture - The neuron and its passive electrical properties
Thursday, Sept 12 (SG 0211) :
- TA-led 15 min recap talk
- Exercises
- Exceptional: NO quiz on 12/09/2024!
Monday, Sept 16 (Holiday - Lundi du jeûne fédéral)
- Lecture - Part 1: Introduction (File)
- Lecture - Part 2: Neuron Basics (File)
- Overview Slides - Neuron Basics (File)
- Exercise - Neuron Basics (File)
- Exercices solutions - Neuron Basics (File)
Unit 2: Action potentials and electrical excitability
Reading: Chapter 3 (all pages); Chapter 4 pp. 65-72
In
this unit I will discuss how the electrical properties of the neuron permit signal transduction as an 'action potential'.
Thursday, Sept 19 (SG 0211):
Monday, Sept 23 (DIA003, DIA004):
- TA-led 15 min recap talk
- Exercises
- Quiz
- Lecture - Action potentials and electrical excitability (File)
- Overview Slides - Action Potentials (File)
- Exercises - Action Potentials (File)
- Exercise solutions - Action Potentials (File)
Unit 3: Synaptic transmission and neurotransmitters
Reading:
Chapter 5 (pages 85 - 93, 95-98, 102 - 103, 106 - 109, 111)
In
this unit we will explore how signals can be passed from one neuron to another at the synapse.
Thursday, Sept 26 (SG 0211):
Monday, Sept 30 (DIA003/004):
- TA-led 15 min recap talk
- Exercises
- Quiz
- Lecture - Synaptic transmission and neurotransmitters (File)
- Overview Slides - Synapses (File)
- Exercises - Synapses (File)
- Exercises solutions - Synapses (File)
Unit 4: Audition (hearing)
In
this unit I will explain how we hear, focusing on the first stages of peripheral sound sensing.
Thursday, Oct 3 (SG 0211):
Monday, Oct 7 (DIA003/004):
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Audition (hearing) (File)
- Exercises - Audition (File)
- Exercice solutions - Audition (File)
- Audition - Overview (File)
Unit 5: The somatosensory system
Reading: Chapter 9
In this unit I will discuss the somatosensory system, specifically covering proprioception and touch.
Thursday, Oct 10 (no in person class!):
Monday, Oct 14 (DIA003/004):
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Somatosensation (touch) (File)
- Overview Slides (File)
- Exercises - Somatosensory (File)
- Exercise Solutions - Somatosensory (File)
Unit 6: Pain and the nociceptive system
In
this unit we will explore the neural mechanisms giving rise to the sensation of pain.
Thursday, Oct 17 (SG 0211):
Monday, Oct 28 (DIA003/004):
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Pain and nociception (File)
- Pain - Overview (File)
- Pain - Exercises (File)
- Pain - Exercise solutions (File)
Unit 7: Vision - the eye and retina
Reading:
Chapter 11 (Boxes are not as critical)
Thursday, Oct 31 (SG 0211):
Monday, Nov 4 (DIA003/004):
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Vision, the eye and retina (File)
- Unit Overview Slides (File)
- Exercises - Retina (File)
- Exercises Solutions - Retina (File)
Unit 8: Vision – Systems & Circuits
Reading:Â
Chapter 12 (Boxes are not as critical)
Thursday, Nov 7:
Monday, Nov 11 (DIA003/004):
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Vision Systems and Circuits (File)
- Exercises - Visual system (File)
- Exercise Solutions (Folder)
- Unit Overview Slides (File)
Unit 9: Motor systems: Spinal cord and Cerebellum
Reading:
Chapter 16 (in particular, pages 357-361; 366-376)
Chapter 19 (pages 427-441)
In this unit I will introduce the motor system focusing on the spinal cord and cerebellum.
Thursday, Nov 14 (SG 0211):
Monday, Nov 18 (DIA003/004):
- TA-led 15 min recap talk
- Exercises
- Quiz
- Lecture - Spinal cord and Cerebellum (File)
- Overview Slides (File)
- Exercise - Motor system I (File)
- Exercice Solutions - Motor System I (File)
Unit 10: Motor systems: Cortex and Basal ganglia
Reading:
Chapter 17: pages 381-397 (Motor cortex)
Chapter 18: pages 407-417 (Basal ganglia)
In this unit we will cover how motor cortex and basal ganglia contribute to motor control.
Thursday, Nov 21 (SG 0211):
Monday, Nov 25 (DIA003/004):
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Motor systems: Cortex and Basal ganglia (File)
- Exercise - Motor system II (File)
- Exercice solutions - Motor system II (File)
- Overview slides (File)
Unit 11: Learning & Memory
Reading:
Chapter 27 (pages 627 - 631 and 635 - 640);

Chapter 30 (pages 681 - 698);

Chapter 8 (pages 176 - 183, Boxes are not critical)
This week we will cover a fundamental aspect of neural systems. Namely,
how they learn from past experience and store memories. 

Monday, Dec 2 (DIA003/004):
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Learning and Memory (File)
- Memory - Overview (File)
- Exercises - Memory (File)
- Exercise solutions - Memory (File)
Unit 12: Techniques in Neuroscience
Reading:
Chapter 1 pages 10-28.
This week I will discuss modern tools & techniques for studying and perturbing the brain.
Monday, Dec 5 (SG 0211)
Thursday, Dec 9 (DIA 003/004)
- TA lead 15 min recap talk
- Exercises
- Quiz
- Lecture - Techniques in Neuroscience (File)
- Overview Slides - Techniques (File)
- Exercices - Techniques in neuroscience (File)
- Exercises solutions - Techniques in neuroscience (File)
Unit 13: Overview of Neuroscience and Careers discussion
Reading: none
This week covers a general overview of model neuroscience and its approaches, ethics, and sustainability.
Afterwards, we will have an open (not filmed) discussion about how to further pursue careers in neuroscience.
Thursday, Dec 12 (SG 0211):
- Lecture - Neuroscience goals, ethics, and sustainability
- Break
- Lecture - Careers discussion/Q&A (not filmed, not on the Final Exam)
Monday, Dec 16 (DIA 003/004):
- Final Exam Review (NO quiz this week)
Please
prepare all your remaining questions about the course for Monday. We will answer them in person during the review
session and on Ed. Please not that we will not answer questions sent after Monday Dec 16 at
midnight.
- Lecture - Overview of neuroscience goals, models, ethics, and sustainability (File)
- Overview slides - Unit 1 to 13 (File)
Dec 19, Final Exam (Room CE 1 4)
Here is a practice exam to help you prepare. The final exam covers Units 1-13.Â
It will take place in Room CE 1 4. Please bring your CamiPro and writing utensils.
We also provide you with some questions that can help you evaluate your overall knowledge of the course (those questions are not necessarily exam questions but are more intended to help you revise ;))