Genomics and bioinformatics
BIO-463
Select a paper for the mini-projects
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Description
Please use the table below to choose one paper as the subject of your mini-project to be returned by the end of week 14
| Paper name | Pubmed link | Data type | Topic | ||
|---|---|---|---|---|---|
| 1 | Krishnan et al. Mol Cell Prot 2021 | PubmedID:34619366 | Krishnan_MolCellProt21.pdf | metabolomics, proteomics | COVID-19, immunity, metabolism |
| 2 | Liang et al. BMC Infect. Dis. 2024 | PubmedID:38166628 | Liang_BMCInfectDis24.pdf | microarrays | infection, gene expression, regulatory pathways |
| 3 | Castellanos-Rueda et al. Nat Comm 2022 | PubmedID:36323661 | Castellanos-Rueda_NatComm22.pdf | scRNA-seq |
immunity, bioengineering, cancer |
| 4 | Castellanos-Rueda et al. Sci Adv 2025 | PubmedID:39951542 | Castellanos-Rueda_SciAdv25.pdf | scRNA-seq | immunity, bioengineering, cancer |
| 5 | Squair et al. Nat Comm 2021 | PubmedID:34584091 | Squair_NatComm21.pdf | RNA-seq, scRNA-seq | statistics, cell heterogeneity, gene expression |
| 6 | Mekbib et al. PLOS genet 2022 | PubmedID:35789210 | Mekbib_PLOSgen22.pdf | RNA-seq | circadian rhythm, metabolism, transcription regulation |
| 7 | Helmsauer et al. Nat Comm 2020 | PubmedID:33199677 | Helmsauer_NatComm20.pdf | ChIP-seq, ATAC-seq | genetics, chromatin state, cancer |
| 8 | Loker et al. Curr Biol 2021 | PubmedID:34358443 | Loker_CurrBiol21.pdf | ChIP-seq, ATAC-seq, RNA-seq | development, genetics, chromatin state |