dpd

Title	" FREP experiment  "
Date 29/08/22
Comment    " Single polymer with sticky endcaps to measure the fraction of time they stick to each other.

This box size and runtime should take about 2 hours per simulation.

  "

State    random


Bead	W
    	0.5
    	25	
    	4.5	

Bead	E
    	0.5
    	25    5
    	4.5   4.5

Bead	B
    	0.5
    	23    25    25
    	4.5   4.5   4.5
     
Bead    F
        0.5
        25    25     25    25
        4.5   4.5   4.5   4.5

Bond	E  E   128  0.5
Bond	B  B   128  0.5
Bond	E  B   128  0.5
Bond    F  F   128  0.5
Bond    F  B   128  0.5

BondPair B B B   1.0  0.0

Polymer Water   0.99998 " (W) "
Polymer Rod     0.00002  " (E E E E (16 B) E E E E)  "


Box        30  30  30             1 1 1
Density	3
Temp		1
RNGSeed     -221288
Lambda		0.5
Step		0.02
Time             50000
SamplePeriod     100
AnalysisPeriod   10000
DensityPeriod    50000
DisplayPeriod    1000
RestartPeriod    50000
Grid  1 1 1

Command ToggleBeadDisplay              1   W
Command SetCurrentStateCamera          1   0.5 -1.5 0.5  0.5 0.5 0.5
Command SetCurrentStateDefaultFormat  1    Paraview

Command SavePolymerBeadRDF             10000 4 60 15 Rod  E