Cytosim PI Cytoskeleton Simulator

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List of all members | Public Member Functions | Friends
ShackleProp Class Reference
All Object Properties
Inheritance diagram for ShackleProp:

## Public Member Functions
| ShackleProp (const std::string &n)
| constructor
| ~ShackleProp ()
| destructor
Couple * | newCouple (Glossary *opt) const
| return a Hand with this property
void | clear ()
| set default values
void | read (Glossary &)
| set from a Glossary
void | complete (SimulProp const *, PropertyList *)
| compute values derived from the parameters
Property * | clone () const
| return a carbon copy of object
void | write_data (std::ostream &) const
| write all values
Public Member Functions inherited from CoupleProp
| CoupleProp (const std::string &n)
| constructor
| ~CoupleProp ()
| destructor
std::string | kind () const
| identifies the property
Space const * | confineSpace () const
| return confining Space
Public Member Functions inherited from Property
| Property (const std::string &n, const int index=-1)
| constructor must provide a name
virtual | ~Property ()
| destructor
std::string | name () const
| return identifier for instantiation
void | name (const std::string &n)
| change name
bool | is_named (const std::string &n)
| true if 'name' matches
int | index () const
| index, unique among all Property of similar kind()
void | index (int x)
| set index in the array of Properties
bool | modified () const
| true if at least one value is different than its default setting
void | readString (std::string &, char stamp)
| set from a string, return number of values assigned More...
void | readFile (const char file[])
| set from a string, return number of values assigned
void | write_diff (std::ostream &, const Property *ref) const
| write only values that differ from the ones specified in ref
void | write_diff (std::ostream &, bool prune) const
| if ( prune == true ), write values that differ from the default values
void | write (std::ostream &, bool prune=false) const
| write header + data More...

## Friends
class | Shackle

## Additional Inherited Members
Public Types inherited from CoupleProp
enum | Specificity { BIND_ALWAYS, BIND_ANTIPARALLEL, BIND_PARALLEL }
| indicates a specificity for crosslinking two fibers More...
Static Public Member Functions inherited from Property
template<typename C >
static void | write_param (std::ostream &os, std::string const &name, C const &c)
| formatted output of one parameter
template<typename C >
static void | write_param (std::ostream &os, std::string const &name, C const *c, int cnt)
| formatted output of one parameter
template<typename C , typename D >
static void | write_param (std::ostream &os, std::string const &name, C const &c, D const &d)
| formatted output of one parameter
template<typename C , typename D , typename E >
static void | write_param (std::ostream &os, std::string const &name, C const &c, D const &d, E const &e)
| formatted output of one parameter
template<typename C , typename D , typename E , typename F >
static void | write_param (std::ostream &os, std::string const &name, C const &c, D const &d, E const &e, F const &f)
| formatted output of one parameter
Public Attributes inherited from CoupleProp
std::string | hand1
| name of first Hand in Couple
std::string | hand2
| name of second Hand in Couple
real | stiffness
| stiffness of link between the two Hands while linking
real | length
| resting length of the link
real | diffusion
| diffusion coefficient while unattached
bool | fast_diffusion
| if true, an algorithm is used that assumes uniform concentration of diffusing Couple
bool | stiff
| prevent both Hands from binding at the same position on a Fiber (default=true)
Confinement | confine
| Confinement can be none, inside (default) or surface.
real | confine_stiff
| Unused Parameter: confinement stiffness (this is specified as `confine`[1])
std::string | confine_space
| name of space for confinement (this is specified as `confine`[2])
std::string | activity
| specialization More...
Protected Attributes inherited from CoupleProp
real | diffusion_dt
HandProp * | hand_prop1
HandProp * | hand_prop2
Space const * | confine_space_ptr