Cytosim PI Cytoskeleton Simulator

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Simul Member List

This is the complete list of members for Simul, including all inherited members.

add(Object *) | Simul |
add(ObjectList) | Simul |
analyzeClusters() const | Simul |
beads | Simul |
calculateForces() const | Simul |
couples | Simul |
custom0() | Simul |
custom1() | Simul |
custom2() | Simul |
custom3() | Simul |
custom4() | Simul |
custom5() | Simul |
custom6() | Simul |
custom7() | Simul |
custom8() | Simul |
custom9() | Simul |
dump() const | Simul | inline
erase(Object *) | Simul |
erase(ObjectList) | Simul |
erase() | Simul |
fibers | Simul |
fields | Simul |
findFiber(long num) const | Simul | inline
findObject(const Tag, long) | Simul |
findObject(const std::string &, long) const | Simul |
findProperties(const std::string &) const | Simul |
findProperty(const std::string &, const std::string &) const | Simul |
findProperty(const std::string &, const int index) const | Simul |
findSet(const std::string &kind) | Simul |
findSet(const std::string &kind) const | Simul | inline
findSingleProp(const std::string &nm) const | Simul |
firstSpace(const std::string &name) | Simul |
foldPosition() const | Simul |
initialize(Glossary &) | Simul |
isProperty(const std::string &) const | Simul |
isReady() const | Simul | inline
mark(ObjectList, int) | Simul |
newProperty(const std::string &, const std::string &, Glossary &) | Simul |
organizers | Simul |
prepare(Space *spc) | Simul |
prepare() | Simul | inline
prop | Simul |
properties | Simul |
readObjects(InputWrapper &) | Simul |
readObjects(std::string const &file) | Simul |
readReference(InputWrapper &, char &tag) | Simul |
relax() | Simul | inline
remove(Object *) | Simul |
remove(ObjectList) | Simul |
report(std::ostream &, std::string const &str, Glossary &) const | Simul |
report(std::ostream &, std::string const &what, std::string const &who, Glossary &) const | Simul |
reportBeadPosition(std::ostream &) const | Simul |
reportBeadSingles(std::ostream &) const | Simul |
reportClusters(std::ostream &, bool) const | Simul |
reportCouple(std::ostream &) const | Simul |
reportCouplePosition(std::ostream &) const | Simul |
reportCouplePosition(std::ostream &, std::string const &) const | Simul |
reportCustom(std::ostream &) const | Simul |
reportFiber(std::ostream &) const | Simul |
reportFiberDynamic(std::ostream &, FiberEnd) const | Simul |
reportFiberDynamic(std::ostream &) const | Simul |
reportFiberEnds(std::ostream &) const | Simul |
reportFiberForces(std::ostream &) const | Simul |
reportFiberLengthDistribution(std::ostream &, real delta, real max) const | Simul |
reportFiberLengths(std::ostream &) const | Simul |
reportFiberPoints(std::ostream &) const | Simul |
reportFiberSegments(std::ostream &) const | Simul |
reportFiberSpeckles(std::ostream &, real) const | Simul |
reportFiberStates(std::ostream &) const | Simul |
reportFiberTension(std::ostream &, Glossary &opt) const | Simul |
reportOrganizer(std::ostream &) const | Simul |
reportSingle(std::ostream &) const | Simul |
reportSingleForce(std::ostream &) const | Simul |
reportSinglePosition(std::ostream &) const | Simul |
reportSinglePosition(std::ostream &, std::string const &) const | Simul |
reportSolid(std::ostream &) const | Simul |
reportSpace(std::ostream &) const | Simul |
reportSphere(std::ostream &) const | Simul |
reportTime(std::ostream &) const | Simul |
setInteractions(Meca &) const | Simul |
setTime(real t) | Simul | inline
simTime() const | Simul | inline
Simul() | Simul |
singles | Simul |
solids | Simul |
solve() | Simul |
space(Space *spc) | Simul |
space() const | Simul | inline
spaces | Simul |
spheres | Simul |
step() | Simul |
writeObjects(OutputWrapper &) const | Simul |
writeObjects(std::string const &file, bool binary, bool append) const | Simul |
writeProperties(std::ostream &, bool prune) const | Simul |
writeProperties(std::string &file, bool prune) const | Simul |
~Simul() | Simul | virtual