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## A

AbsMulti2DGrid - Class in uchicago.src.sim.space
  Base class for grids whose cells can hold more that one occupant.
AbsMulti2DGrid(int, int, boolean) - Constructor for class uchicago.src.sim.space.AbsMulti2DGrid
  Creates this AbsMulti2DGrid with the specified dimensions.
AbsMulti2DHexagonalGrid - Class in uchicago.src.sim.space
  Base class for hexagonal grids whose cells can hold more that one occupant.
AbsMulti2DHexagonalGrid(int, int, boolean) - Constructor for class uchicago.src.sim.space.AbsMulti2DHexagonalGrid
  Creates this AbsMulti2DHexagonalGrid with the specified dimensions.
AbsMulti2DHexagonalTorus - Class in uchicago.src.sim.space
  Base class for hexagonal torii whose cells can hold more that one occupant.
AbsMulti2DHexagonalTorus(int, int, boolean) - Constructor for class uchicago.src.sim.space.AbsMulti2DHexagonalTorus
  Creates this AbsMulti2DHexagonalGrid with the specified dimensions.
AbsMulti2DTorus - Class in uchicago.src.sim.space
  Base class for tori whose cells can hold more that one occupant.
AbsMulti2DTorus(int, int, boolean) - Constructor for class uchicago.src.sim.space.AbsMulti2DTorus
  Creates this AbsMulti2DGrid with the specified dimensions.
AbstractAdjacencyMatrix - Class in uchicago.src.sim.network
AbstractAdjacencyMatrix() - Constructor for class uchicago.src.sim.network.AbstractAdjacencyMatrix
AbstractChartModel - Class in uchicago.src.sim.analysis
  Model (MVC) class used by the Chart GUI.
AbstractChartModel(SimModel) - Constructor for class uchicago.src.sim.analysis.AbstractChartModel
  Creates an AbstractChartModel.
AbstractConstantParameter - Class in uchicago.src.sim.parameter.rpl
  Defines common behavior for constant RPLParameters.
AbstractConstantParameter(String) - Constructor for class uchicago.src.sim.parameter.rpl.AbstractConstantParameter
  Creates an AbstractConstantParameter with the specified name.
AbstractDataSourceRecorder - Class in uchicago.src.sim.analysis
  Created by IntelliJ IDEA.
AbstractDataSourceRecorder() - Constructor for class uchicago.src.sim.analysis.AbstractDataSourceRecorder
AbstractDynamicParameter - Class in uchicago.src.sim.parameter.rpl
  Defines common behavior for Dynamic RPLParameters.
AbstractDynamicParameter(String) - Constructor for class uchicago.src.sim.parameter.rpl.AbstractDynamicParameter
  Creates a AbstractDynamicParameter with the specified name.
AbstractGraphLayout - Class in uchicago.src.sim.gui
  Abstract implementation of the GraphLayout interface.
AbstractGraphLayout(int, int) - Constructor for class uchicago.src.sim.gui.AbstractGraphLayout
AbstractGraphLayout(List, int, int) - Constructor for class uchicago.src.sim.gui.AbstractGraphLayout
AbstractGUIController - Class in uchicago.src.sim.engine
  Base class for GUI controllers.
AbstractGUIController() - Constructor for class uchicago.src.sim.engine.AbstractGUIController
  Constructs an AbstractGUIController with no associated model, or parameters.
AbstractGUIController(ParameterSetter) - Constructor for class uchicago.src.sim.engine.AbstractGUIController
  Constructs a AbstractGUIController whose model has the specified parameters.
AbstractNeighborhooder - Class in uchicago.src.sim.space
AbstractNeighborhooder(Discrete2DSpace) - Constructor for class uchicago.src.sim.space.AbstractNeighborhooder
AbstractParameterSetter - Class in uchicago.src.sim.parameter
  Defines some common code to be used by implementations of ParameterSetter.
AbstractParameterSetter() - Constructor for class uchicago.src.sim.parameter.AbstractParameterSetter
AbstractParameterSetter.ParamName - Class in uchicago.src.sim.parameter
  Represents a parameter name as both its "given name" and as fully lower case.
AbstractParameterSetter.ParamName(String) - Constructor for class uchicago.src.sim.parameter.AbstractParameterSetter.ParamName
AbstractParameterSetter.ParamNameIterator - Class in uchicago.src.sim.parameter
AbstractParameterSetter.ParamNameIterator(Iterator) - Constructor for class uchicago.src.sim.parameter.AbstractParameterSetter.ParamNameIterator
AbstractProbabilityRule - Class in uchicago.src.sim.network
  Implements some generic functionality for ProbabilityRule-s.
AbstractProbabilityRule(List, float, Object) - Constructor for class uchicago.src.sim.network.AbstractProbabilityRule
  Creates this AbstractProbabilityRule to operate on the specified list of Objects, excluding the specified node, and assinging the Objects the specified starting weight.
AbstractProbabilityRule(List, float) - Constructor for class uchicago.src.sim.network.AbstractProbabilityRule
  Creates this AbstractProbabilityRule to operate on the specified list of Objects, and assinging the Objects the specified starting weight.
AbstractRPLParameter - Class in uchicago.src.sim.parameter.rpl
  Default but not complete implementation of the RPLParameter interface.
AbstractRPLParameter(String) - Constructor for class uchicago.src.sim.parameter.rpl.AbstractRPLParameter
  Creates an AbstractRPLParameter with the specified name.
acceptConnections() - Method in class uchicago.src.sim.analysis.DataServer
ActionDescriptor - Class in uchicago.src.reflector
  Describes an Action.
ActionDescriptor(String, ActionListener) - Constructor for class uchicago.src.reflector.ActionDescriptor
actionEvent - Variable in class uchicago.src.sim.event.CheckBoxListener
ActionGroup - Class in uchicago.src.sim.engine
  A collection of BasicActions to be executed by a schedule.
ActionGroup() - Constructor for class uchicago.src.sim.engine.ActionGroup
  Constructs an ActionGroup with a default sequential execution.
ActionGroup(int) - Constructor for class uchicago.src.sim.engine.ActionGroup
  Constructs an ActionGroup with execution of the specified type.
actionPerformed(ActionEvent) - Method in class anl.repast.gis.display.PropertyWindow
actionPerformed(ActionEvent) - Method in class anl.repast.gis.display.RepastMapMouseInterpreter.MouseTimerListener
ActionPerformed(ActionEvent) - Method in class anl.repast.gis.display.RepastOMLayer
ActionPerformed(ActionEvent) - Method in class anl.repast.gis.display.RepastOMMultiLayer
actionPerformed(ActionEvent) - Method in class uchicago.src.reflector.IntrospectPanel
actionPerformed(ActionEvent) - Method in class uchicago.src.repastdemos.neuralfromfile.AgentSelectorDialog
  called when the ok or cancel button is clicked
actionPerformed(ActionEvent) - Method in class uchicago.src.sim.engine.gui.ParameterWizard
actionPerformed(ActionEvent) - Method in class uchicago.src.sim.event.CheckBoxListener
  Reponds to ActionEvent fired by a JCheckBox.
actionPerformed(ActionEvent) - Method in class uchicago.src.sim.gui.AbstractGraphLayout
  Empty implementation of ActionListener interface.
actionPerformed(ActionEvent) - Method in class uchicago.src.sim.gui.FruchGraphLayout
  Implements the ActionListener interface.
actionPerformed(ActionEvent) - Method in class uchicago.src.sim.gui.KamadaGraphLayout
  Implements the ActionListener interface.
ActionQueue - Class in uchicago.src.sim.engine
  Priority Queue for Action objects.
ActionQueue() - Constructor for class uchicago.src.sim.engine.ActionQueue
ActionQueue(int) - Constructor for class uchicago.src.sim.engine.ActionQueue
actionQueue - Variable in class uchicago.src.sim.engine.ScheduleBase
actions - Variable in class uchicago.src.sim.engine.ScheduleGroup
ActionUtilities - Class in uchicago.src.sim.engine
  A collection of utility methods for the creation of SimActions and SimListActions.
ActionUtilities() - Constructor for class uchicago.src.sim.engine.ActionUtilities
activate(int) - Method in class uchicago.src.repastdemos.hypercycles.HyperCell
  Returns the the int value of the activated skill - i.e. 1 activates 2, so return 2 etc. or returns -1 if no activation
add(String, Object) - Method in class uchicago.src.codegen.ArgGenerator
add(String) - Method in class uchicago.src.codegen.BodyGenerator
add(String, Object) - Method in class uchicago.src.codegen.BodyGenerator
add(String, Object) - Method in class uchicago.src.codegen.ClassGenerator
add(String, Object) - Method in interface uchicago.src.codegen.CodeGenerator
add(String, Object) - Method in class uchicago.src.codegen.CompUnitGenerator
add(String, Object) - Method in class uchicago.src.codegen.ImportGenerator
add(String, Object) - Method in class uchicago.src.codegen.IvarGenerator
add(String, Object) - Method in class uchicago.src.codegen.MethodGenerator
add(Object) - Method in class uchicago.src.sim.engine.DefaultGroup
add(int, Object) - Method in class uchicago.src.sim.engine.DefaultGroup
add(Object) - Method in class uchicago.src.sim.space.BagCell
  Adds an object to this cell.
add(Object) - Method in interface uchicago.src.sim.space.Cell
  Adds an object to this cell.
add(ArrayList, int, int) - Method in class uchicago.src.sim.space.HexMultiNeighborhooder.LocAdder
add(ArrayList, int, int) - Method in class uchicago.src.sim.space.HexMultiNeighborhooder.ObjectAdder
add(Object) - Method in class uchicago.src.sim.space.OrderedCell
  Adds an object to this cell.
add(Object) - Method in class uchicago.src.sim.util.ConservationCollection
  Adds the specified object to the collection.
add(int, Object) - Method in class uchicago.src.sim.util.ConservationCollection
add_escapes(String) - Method in exception uchicago.src.sim.parameter.rpl.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
addAction(BasicAction) - Method in class uchicago.src.sim.engine.ActionGroup
  Adds a BasicAction to the list of BasicActions to execute.
addActionListener(ActionListener) - Method in class uchicago.src.reflector.FileWidget
addActionListener(ActionListener) - Method in class uchicago.src.reflector.PropertyButton
addActionListener(ActionListener) - Method in class uchicago.src.reflector.PropertyLabel
addActionListener(ActionListener) - Method in class uchicago.src.reflector.PropertyTextField
addActionListener(ActionListener) - Method in interface uchicago.src.reflector.PropertyWidget
addActionListener(ActionListener) - Method in class uchicago.src.reflector.RangeWidget
addActionListener(ActionListener) - Method in class uchicago.src.sim.math.CEquationPropertyWidget
addAgent(LifeAgent) - Method in class uchicago.src.repastdemos.life.InfiniteLifeSpace
  Adds the agent at its coordinates.
addAgent(LifeAgent) - Method in class uchicago.src.repastdemos.life.LifeModel
addAgent(LifeAgent) - Method in class uchicago.src.repastdemos.life.LifeSpace
  Adds the agent at its coordinates.
addAgent(LifeAgent) - Method in interface uchicago.src.repastdemos.life.Space
addAgentInfo() - Method in class anl.repast.gis.display.PropertyWindow
addAll(Collection) - Method in class uchicago.src.sim.engine.DefaultGroup
addAll(int, Collection) - Method in class uchicago.src.sim.engine.DefaultGroup
addAll(Collection) - Method in class uchicago.src.sim.util.ConservationCollection
addAll(int, Collection) - Method in class uchicago.src.sim.util.ConservationCollection
addArg(String, String) - Method in class uchicago.src.codegen.MethodGenerator
addArg(ArgGenerator) - Method in class uchicago.src.codegen.MethodGenerator
addBasicAction(BasicAction) - Method in class uchicago.src.sim.engine.ScheduleGroup
addBatchListener(BatchListener) - Method in class uchicago.src.sim.engine.BatchController
  adds a batch listener to this batch controller
addBlockActionPerformed(ActionEvent) - Method in class uchicago.src.sim.engine.gui.components.ParameterWizardPanel
addBuffer(Buffer) - Method in class uchicago.src.sim.gui.BufferDataSource
addBuffer(Buffer) - Method in class uchicago.src.sim.gui.BufferSourceStream
addButton(String, ActionListener) - Method in class uchicago.src.sim.engine.Controller
  Adds a user defined button to the toolbar.
addButton(JButton) - Method in class uchicago.src.sim.engine.Controller
  Adds a user defined button to the toolbar.
addButton(String, ActionListener) - Method in class uchicago.src.sim.engine.gui.RepastActionPanel
addButton(Action) - Method in class uchicago.src.sim.engine.gui.RepastActionPanel
addButton(String, ActionListener) - Method in class uchicago.src.sim.engine.ModelManipulator
  Adds a button with the specified label and listener to this ModelManipulator.
addCellEditorListener(CellEditorListener) - Method in class uchicago.src.sim.engine.gui.components.RadioBarPanel
  Adds a `CellEditorListener` to the listener list.
AddChartGui - Class in uchicago.src.sim.analysis
  Gui for adding custom charts.
AddChartGui(SimModel) - Constructor for class uchicago.src.sim.analysis.AddChartGui
addCheckBox(String, ActionListener, boolean) - Method in class uchicago.src.sim.engine.gui.RepastActionPanel
addCheckBox(String, CheckBoxListener, boolean) - Method in class uchicago.src.sim.engine.ModelManipulator
  Adds a checkbox to this ModelManipulator with the specified label, CheckBoxListener, and whether the box should be selected initially.
addChild(Parameter) - Method in class uchicago.src.sim.parameter.Parameter
  Adds a Parameter to this parameter as a child.
addChildConstant(RPLParameter) - Method in class uchicago.src.sim.parameter.rpl.AbstractRPLParameter
  Adds the specified RPLParameter as a child constant parameter of this RPLParameter.
addChildConstant(RPLParameter) - Method in interface uchicago.src.sim.parameter.rpl.RPLParameter
  Adds the specified RPLParameter as a child constant parameter of this RPLParameter.
addChildParameter(RPLParameter) - Method in class uchicago.src.sim.parameter.rpl.AbstractRPLParameter
  Adds the specified RPLParameter as a child parameter of this RPLParameter.
addChildParameter(RPLParameter) - Method in interface uchicago.src.sim.parameter.rpl.RPLParameter
  Adds the specified RPLParameter as a child parameter of this RPLParameter.
addClass(String, ClassFile) - Method in class uchicago.src.codegen.RSClassLoader
addClassGenerator(ClassGenerator) - Method in class uchicago.src.codegen.CompUnitGenerator
addColorChangeListener(ChangeListener) - Method in class uchicago.src.guiUtils.ColorChooserPopup
addComponent(Component) - Method in class uchicago.src.sim.engine.ModelManipulator
  Adds the specified Component to this ModelManipulation.
addData(Object) - Method in class uchicago.src.sim.analysis.ObjectData
  Adds newData to this ObjectData
addData(List) - Method in class uchicago.src.sim.analysis.SimData
  Add a vector of data to this SimData.
addData(List) - Method in class uchicago.src.sim.analysis.SimDataNew
  Add a vector of data to this SimData.
addDemos(ArrayList) - Method in class uchicago.src.sim.engine.LoadModelTree
  Adds the list of SimModels in the specified ArrayList to the demos node.
addDetailString(String) - Method in class uchicago.src.sim.analysis.plot.RepastPlotBox
  Adds a String to be displayed to the right of the plot
addDisplayable(Displayable, String) - Method in class uchicago.src.sim.gui.DisplaySurface
  Adds a Displayable to the list of displayables that are displayed when `updateDisplay` is called.
addDisplayable(Displayable, String, int) - Method in class uchicago.src.sim.gui.DisplaySurface
  Adds a Displayable to the list of displayables that are displayed when `updateDisplay` is called.
addDisplayable(Displayable) - Method in class uchicago.src.sim.gui.Painter
  Adds a Displayable to the list of displayables to be displayed.
addDisplayable(DisplaySurface.DisplayableOrder) - Method in class uchicago.src.sim.gui.Painter
  Addes a displayable order to the list of ordered displayables.
addDisplayableProbeable(Displayable, String) - Method in class uchicago.src.sim.gui.DisplaySurface
  Adds the specified Displayable to the displayables list and the probeables list.
addEscapes(String) - Static method in error uchicago.src.sim.parameter.rpl.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addExitListener(ActionListener) - Method in class uchicago.src.sim.engine.Controller
  Adds an ActionListener listening for exit button presses.
addFeature(Feature) - Method in class anl.repast.gis.data.FeatureArrayList
addGraticuleLayer() - Method in class anl.repast.gis.display.OpenMapDisplay
  add the Graticule layer to the map (shows lat/lon lines over the map)
addHeaderComment(String) - Method in class uchicago.src.sim.analysis.DataFileHeader
  Prepends a comment to the usual file header.
addHeat(int, int, int) - Method in class uchicago.src.repastdemos.heatBugs.HeatSpace
addHeat(int, int, int) - Method in class uchicago.src.repastdemos.hexabugs.HexaSpace
addIconButton(String, ActionListener) - Method in class uchicago.src.sim.engine.Controller
  Adds a user defined button to the toolbar.
addImageAsFrame(Image) - Method in class uchicago.src.sim.gui.MovieMaker
  Adds an image to a movie as a frame with a default sleep value of 40
addImageAsFrame(Image, int) - Method in class uchicago.src.sim.gui.MovieMaker
  Adds an image to a movie as a frame.
addImport(ImportGenerator) - Method in class uchicago.src.codegen.CompUnitGenerator
AddIncrementer - Class in uchicago.src.sim.engine
AddIncrementer(double, double, double) - Constructor for class uchicago.src.sim.engine.AddIncrementer
addInEdge(Edge) - Method in class uchicago.src.sim.gui.OvalNode
  Deprecated. Adds an in Edge to this OvalNode
addInEdge(Edge) - Method in class uchicago.src.sim.gui.RectNode
  Deprecated. Adds an in Edge to this RectNode
addInEdge(Edge) - Method in class uchicago.src.sim.network.DefaultNode
  Adds an in Edge to this DefaultNode.
addInEdge(Edge) - Method in interface uchicago.src.sim.network.Node
  Add an in edge to this node.
addInEdges(Collection) - Method in class uchicago.src.sim.network.DefaultNode
  Adds in edges.
addIvar(IvarGenerator) - Method in class uchicago.src.codegen.ClassGenerator
addKeyListener(KeyListener) - Method in class uchicago.src.sim.engine.Controller
  Adds a KeyListener listening for any keyboard action when the control toolbar has focus.
addKeyListener(KeyListener) - Method in class uchicago.src.sim.gui.DisplaySurface
addLayer(List, String) - Method in class anl.repast.gis.display.OpenMapDisplay
  add a Layer of OpenMapAgents to the map display
addLayer(List, String, Color) - Method in class anl.repast.gis.display.OpenMapDisplay
  add a Layer of OpenMapAgents to the map display set the highlight color for use when the mouse moves over a an agent on the map
addLayoutComponent(String, Component) - Method in class layout.TableLayout
  Adds the specified component with the specified name to the layout.
addLayoutComponent(Component, Object) - Method in class layout.TableLayout
  Adds the specified component with the specified name to the layout.
addLegend(int, String) - Method in class uchicago.src.sim.analysis.Plot
  Adds a legend for the specified dataset.
addLegend(int, String, Color) - Method in class uchicago.src.sim.analysis.Plot
  Adds a legend for the specified dataset.
addLegend(int, String, int) - Method in class uchicago.src.sim.analysis.Plot
  Adds a legend for the specified dataset.
addLegend(int, String, Color, int) - Method in class uchicago.src.sim.analysis.Plot
  Adds a legend for the specified dataset.
addLegend(int, String) - Method in class uchicago.src.sim.analysis.plot.RepastPlot
  Add a legend (displayed at the upper right) for the specified data set with the specified string.
addLegend(int, String, Color) - Method in class uchicago.src.sim.analysis.plot.RepastPlot
addLegend(int, String, int) - Method in class uchicago.src.sim.analysis.plot.RepastPlot
addLegend(int, String, Color, int) - Method in class uchicago.src.sim.analysis.plot.RepastPlot
addLegend(int, String) - Method in class uchicago.src.sim.analysis.plot.RepastPlotBox
  Add a legend (displayed at the upper right) for the specified data set with the specified string.
addLegend(int, String, Color) - Method in class uchicago.src.sim.analysis.plot.RepastPlotBox
addLegend(int, String, int) - Method in class uchicago.src.sim.analysis.plot.RepastPlotBox
addLegend(int, String, Color, int) - Method in class uchicago.src.sim.analysis.plot.RepastPlotBox
addLegend(String, int, Color, boolean) - Method in class uchicago.src.sim.gui.Legend
addLegend(String, int, Color, boolean, int, int) - Method in class uchicago.src.sim.gui.Legend
addLegendLabel(String, int, Color, boolean) - Method in class uchicago.src.sim.gui.DisplaySurface
addLegendLabel(String, int, Color, boolean, int, int) - Method in class uchicago.src.sim.gui.DisplaySurface
addLine(String) - Method in class uchicago.src.sim.gui.TextDisplay
  Adds a line of text to be displayed.
addLine(String, int) - Method in class uchicago.src.sim.gui.TextDisplay
  Adds a line of text at the specified index (relative to the other lines.
addListeners() - Method in class uchicago.src.sim.analysis.DataSourcePropPanel
addMember(Object) - Method in class uchicago.src.sim.space.VectorSpace
  Add the specified object to this VectorSpace.
addMethod(MethodGenerator) - Method in class uchicago.src.codegen.ClassGenerator
addModelProbePanel(IntrospectPanel) - Static method in class uchicago.src.sim.util.ProbeUtilities
  Adds the IntrospectPanel for a simulation model.
addModels(ArrayList) - Method in class uchicago.src.sim.engine.LoadModelTree
  Adds the list of SimModels in the specified ArrayList to the models node.
addMovieFrame() - Method in class anl.repast.gis.display.OpenMapDisplay
  Adds the currently displayed image as frame to a movie. setMovieName must be called before this method is called.
addMovieFrame() - Method in class uchicago.src.sim.analysis.plot.OpenGraph
  Adds the currently displayed image as frame to a movie. setMovieName must be called before this method is called.
addMovieFrame() - Method in class uchicago.src.sim.gui.DisplaySurface
  Adds the currently displayed image as frame to a movie. setMovieName must be called before this method is called.
addMovieFrame() - Method in interface uchicago.src.sim.gui.MediaProducer
addMultiLayer(List, String) - Method in class anl.repast.gis.display.OpenMapDisplay
  add a Layer of MultiLayerOpenMapAgents to the map display
addMultiLayer(List, String, Color) - Method in class anl.repast.gis.display.OpenMapDisplay
  add a Layer of MultiLayerOpenMapAgent to the map display set the highlight color for use when the mouse moves over a an agent on the map
addNestParamActionPerformed(ActionEvent) - Method in class uchicago.src.sim.engine.gui.components.ParameterWizardPanel
addNewAgent() - Method in class uchicago.src.repastdemos.sugarscape.SugarModel
addNode(Object, float) - Method in class uchicago.src.sim.network.AbstractProbabilityRule
  Adds a node with the specified weight.
addNode(Node) - Method in class uchicago.src.sim.network.NetworkPath
addNumericDataSource(String, NumericDataSource, int, int) - Method in class uchicago.src.sim.analysis.AbstractDataSourceRecorder
  Adds a NumericDataSource to this DataRecorder with the specified name, and specified number of integral and fractional digits.
addNumericDataSource(String, NumericDataSource) - Method in class uchicago.src.sim.analysis.AbstractDataSourceRecorder
  Adds a NumericDataSource to this DataRecorder with the specified name.
addNumericDataSource(String, NumericDataSource, int, int) - Method in class uchicago.src.sim.analysis.DataRecorder
  Adds a NumericDataSource to this DataRecorder with the specified name, and specified number of integral and fractional digits.
addNumericDataSource(String, NumericDataSource) - Method in class uchicago.src.sim.analysis.DataRecorder
  Adds a NumericDataSource to this DataRecorder with the specified name.
addNumericDataSource(String, NumericDataSource, int, int) - Method in interface uchicago.src.sim.analysis.DataSourceRecorder
  Adds a NumericDataSource to this DataRecorder with the specified name, and specified number of integral and fractional digits.
addNumericDataSource(String, NumericDataSource) - Method in interface uchicago.src.sim.analysis.DataSourceRecorder
  Adds a NumericDataSource to this DataRecorder with the specified name.
addObjectDataSource(String, DataSource) - Method in class uchicago.src.sim.analysis.AbstractDataSourceRecorder
  Adds a DataSource to this DataRecorder with the specified name.
addObjectDataSource(String, DataSource) - Method in class uchicago.src.sim.analysis.DataRecorder
  Adds a DataSource to this DataRecorder with the specified name.
addObjectDataSource(String, DataSource) - Method in interface uchicago.src.sim.analysis.DataSourceRecorder
  Adds a DataSource to this DataRecorder with the specified name.
addOneBall() - Method in class uchicago.src.repastdemos.mousetrap.MouseTrapModel
addOneTriggered() - Method in class uchicago.src.repastdemos.mousetrap.MouseTrapModel
addOtherModel(SimModel) - Method in class uchicago.src.sim.engine.LoadModelTree
  Adds the specified SimModel to the other models nodes.
addOutEdge(Edge) - Method in class uchicago.src.sim.gui.OvalNode
  Deprecated. Adds an out Edge to this OvalNode
addOutEdge(Edge) - Method in class uchicago.src.sim.gui.RectNode
  Deprecated. Adds an out Edge to this RectNode
addOutEdge(Edge) - Method in class uchicago.src.sim.network.DefaultNode
  Adds an out Edge to this DefaultNode
addOutEdge(Edge) - Method in interface uchicago.src.sim.network.Node
  Add an out edge to this node.
addOutEdges(Collection) - Method in class uchicago.src.sim.network.DefaultNode
  Adds out edges.
addParmActionPerformed(ActionEvent) - Method in class uchicago.src.sim.engine.gui.components.ParameterWizardPanel
addPath(String) - Method in class uchicago.src.codegen.RSClassLoader
addPauseListener(ActionListener) - Method in class uchicago.src.sim.engine.Controller
  Adds an ActionListener listening for pause button presses.
addPoint(int, double, double, boolean) - Method in class uchicago.src.sim.analysis.plot.RepastPlot
  In the specified data set, add the specified x, y point to the plot.
addPointWithErrorBars(int, double, double, double, double, boolean) - Method in class uchicago.src.sim.analysis.plot.RepastPlot
  In the specified data set, add the specified x, y point to the plot with error bars.
addProbeable(Probeable) - Method in class uchicago.src.sim.gui.DisplaySurface
  Adds the specified Probeable to the list of probeables.
addProbeListener(ProbeListener) - Static method in class uchicago.src.sim.util.ProbeUtilities
  Adds the specified ProbeListener to receive ProbeEvents from any probed objects.
addProbePanel(Object, IntrospectPanel) - Static method in class uchicago.src.sim.util.ProbeUtilities
  Adds and associates the specified IntrospectPanel with the specified object.
addPropertyListener(PropertyListener) - Method in class uchicago.src.sim.engine.SimModelImpl
  Adds a PropertyListener to this model.
addRecord(Object[]) - Method in class anl.repast.gis.data.dbf.DBFWriter
  Writes a record to the DBF file.
addSequence(NetSequenceGraph) - Method in class uchicago.src.sim.analysis.NetSeqTableRow
addSequence(NetSequenceGraph, String) - Method in class uchicago.src.sim.analysis.NetSeqTableRow
addSequence(NetSequenceGraph, String, Color) - Method in class uchicago.src.sim.analysis.NetSeqTableRow
addSequence(NetSequenceGraph, String, int) - Method in class uchicago.src.sim.analysis.NetSeqTableRow
addSequence(NetSequenceGraph, String, Color, int) - Method in class uchicago.src.sim.analysis.NetSeqTableRow
addSequence(String, Sequence) - Method in class uchicago.src.sim.analysis.OpenSeqStatistic
  Adds the specified sequence with the specified name.
addSequence(String, Sequence) - Method in class uchicago.src.sim.analysis.OpenSequenceGraph
  Adds the specified sequence with the specified name.
addSequence(String, Sequence, Color) - Method in class uchicago.src.sim.analysis.OpenSequenceGraph
  Adds the specified sequence with the specified name to be drawn in the specific color.
addSequence(String, Sequence, int) - Method in class uchicago.src.sim.analysis.OpenSequenceGraph
  Adds the specified sequence with specified name whose points will be drawn in the specified style.
addSequence(String, Sequence, Color, int) - Method in class uchicago.src.sim.analysis.OpenSequenceGraph
  Adds the specified sequence with the specified name to be drawn in the specific color, whose points will be drawn in the specified style.
addSequence(String) - Method in class uchicago.src.sim.analysis.PlotModel
addSeries(String) - Method in class uchicago.src.sim.analysis.OpenArrayData
  Adds a series with the specified name to the data table.
addShapeLayer(String, String) - Method in class anl.repast.gis.display.OpenMapDisplay
  adds a shapelayer using default settings

  this is just for display of the shapefile, it does not set any agent attributes
addShapeLayer(String, String, String, String) - Method in class anl.repast.gis.display.OpenMapDisplay
  adds a shapelayer.
addSimEventListener(SimEventListener) - Method in class uchicago.src.sim.engine.BaseController
  Adds a SimEventListener to listen for SimEvents broadcast from this BaseController.
addSimEventListener(SimEventListener) - Method in interface uchicago.src.sim.engine.IController
  Adds a listener for SimEvents fired by this IController.
addSimEventListener(SimEventListener) - Method in interface uchicago.src.sim.engine.SimEventProducer
addSimEventListener(SimEventListener) - Method in class uchicago.src.sim.engine.SimModelImpl
  Adds a SimEventListener to listen for SimEvents broadcast from this model.
addSkill(Skill) - Method in class uchicago.src.repastdemos.hypercycles.HyperCell
addSlider(String, int, int, int, SliderListener) - Method in class uchicago.src.sim.engine.ModelManipulator
  Adds a slider with the specified label, min and max values, tick interval and SliderListener to this manipulator.
addStartListener(ActionListener) - Method in class uchicago.src.sim.engine.Controller
  Adds an ActionListener listening for start button presses.
addStepListener(ActionListener) - Method in class uchicago.src.sim.engine.Controller
  Adds an ActionListener listening for step button presses.
addStopListener(ActionListener) - Method in class uchicago.src.sim.engine.Controller
  Adds an ActionListener listening for stop button presses.
addString(String) - Method in class uchicago.src.sim.analysis.Plot
  Adds a String to the plot.
addTask(Task) - Method in class uchicago.src.repastdemos.asynchAgents.Employee
  Adds a task to this employee.
addToBody(String) - Method in class uchicago.src.codegen.MethodGenerator
addToGroup(ScheduleGroup) - Method in class uchicago.src.sim.engine.BasicAction
addToHeader(String) - Method in class uchicago.src.sim.analysis.SimData
  Adds the specified String to the header associated with this data
addToHeader(List) - Method in class uchicago.src.sim.analysis.SimData
  Adds the specified list to the header associated with this data
addToHeader(String) - Method in class uchicago.src.sim.analysis.SimDataNew
  Adds the specified String to the header associated with this data
addToHeader(List) - Method in class uchicago.src.sim.analysis.SimDataNew
  Adds the specified list to the header associated with this data
addToNodeWeight(Object, float) - Method in class uchicago.src.sim.network.AbstractProbabilityRule
  Adds the specified value to the current weight for the specified node.
addToParent(RPLParameter) - Method in class uchicago.src.sim.parameter.rpl.AbstractConstantParameter
  Adds this AbstractConstantParameter to the specified parent.
addToParent(RPLParameter) - Method in class uchicago.src.sim.parameter.rpl.AbstractDynamicParameter
  Adds this AbstractDynamicParameter to the specified parent.
addToParent(RPLParameter) - Method in interface uchicago.src.sim.parameter.rpl.RPLParameter
  Adds the this RPLParameter to as a child of the specified parent RPLParameter.
addX(double) - Method in class uchicago.src.sim.analysis.OpenArrayData
  Adds an x value
addX(double) - Method in class uchicago.src.sim.analysis.PlotModel
addXTick(String, double) - Method in class uchicago.src.sim.analysis.plot.RepastPlotBox
  Specify a tick mark for the X axis.
addXY(ArrayList, int, int) - Method in class uchicago.src.sim.space.HexMultiNeighborhooder
addXY(Vector, int, int) - Method in class uchicago.src.sim.space.HexNeighborhooder
addY(double, int) - Method in class uchicago.src.sim.analysis.OpenArrayData
  Adds a Y value to the specified series
addY(double, int) - Method in class uchicago.src.sim.analysis.PlotModel
addYTick(String, double) - Method in class uchicago.src.sim.analysis.plot.RepastPlotBox
  Specify a tick mark for the Y axis.
addZoomable(Zoomable) - Method in class uchicago.src.sim.gui.DisplaySurface
AdjacencyBitMatrix - Class in uchicago.src.sim.network
AdjacencyBitMatrix(int, int) - Constructor for class uchicago.src.sim.network.AdjacencyBitMatrix
  Constructs an AdjacencyBitMatrix with the specified number of rows and columns.
AdjacencyBitMatrix(List) - Constructor for class uchicago.src.sim.network.AdjacencyBitMatrix
  Constructs an AdjacencyBitMatrix with the specified row/col labels.
AdjacencyBitMatrix(byte[][]) - Constructor for class uchicago.src.sim.network.AdjacencyBitMatrix
  Constructs an AdjacencyBitMatrix from the specified two dimensional byte array.
AdjacencyByteMatrix - Class in uchicago.src.sim.network
  A social network adjacency matrix.
AdjacencyByteMatrix(int, int) - Constructor for class uchicago.src.sim.network.AdjacencyByteMatrix
  Constructs an AdjacencyByteMatrix with the specified number of rows and columns.
AdjacencyByteMatrix(List) - Constructor for class uchicago.src.sim.network.AdjacencyByteMatrix
  Constructs an AdjacencyByteMatrix with the specified row/col labels.
AdjacencyByteMatrix(byte[][]) - Constructor for class uchicago.src.sim.network.AdjacencyByteMatrix
  Constructs an AdjacencyByteMatrix from the specified two dimensional byte array.
AdjacencyByteMatrix(ByteMatrix2D) - Constructor for class uchicago.src.sim.network.AdjacencyByteMatrix
  Constructs an AdjancencyByteMatrix using the specified matrix.
AdjacencyDoubleMatrix - Class in uchicago.src.sim.network
  A social network adjacency matrix.
AdjacencyDoubleMatrix(int, int) - Constructor for class uchicago.src.sim.network.AdjacencyDoubleMatrix
  Constructs an AdjacencyMatrix with the specified number of rows and columns.
AdjacencyDoubleMatrix(List) - Constructor for class uchicago.src.sim.network.AdjacencyDoubleMatrix
  Constructs an AdjacencyMatrix with the specified row/col labels.
AdjacencyDoubleMatrix(DenseDoubleMatrix2D) - Constructor for class uchicago.src.sim.network.AdjacencyDoubleMatrix
  Constructs an AdjacencyMatrix from the specified DenseDoubleMatrix2D
AdjacencyDoubleMatrix(double[][]) - Constructor for class uchicago.src.sim.network.AdjacencyDoubleMatrix
  Constructs an AdjacencyMatrix from the specified two dimensional double array.
AdjacencyMatrix - Interface in uchicago.src.sim.network
  A social network adjacency matrix.
AdjacencyMatrixFactory - Class in uchicago.src.sim.network
adjustBeginLineColumn(int, int) - Method in class uchicago.src.sim.parameter.rpl.SimpleCharStream
  Method to adjust line and column numbers for the start of a token.
agentBirth(SugarAgent) - Method in class uchicago.src.repastdemos.sugarscape.SugarModel
agentDeath(SugarAgent) - Method in class uchicago.src.repastdemos.sugarscape.SugarModel
AgentDistribution - Class in uchicago.src.sim.util
  This is a helper class designed to apply random numbers generated using a statistical distribution to a particular variable in your Agent Set.
AgentDistribution(AbstractDistribution, ArrayList, String) - Constructor for class uchicago.src.sim.util.AgentDistribution
  Constructs an AgentDistribution usin the distribution, the agent list and variable name.
agentList - Variable in class uchicago.src.repastdemos.enn.EnnBase
agentList - Variable in class uchicago.src.sim.engine.SimpleModel
agentMove() - Method in class uchicago.src.repastdemos.enn.EnnAgent
AgentSelectorDialog - Class in uchicago.src.repastdemos.neuralfromfile
  A frame that takes in a list of agents, displays them, and returns the agent selected by the user.
AgentSelectorDialog() - Constructor for class uchicago.src.repastdemos.neuralfromfile.AgentSelectorDialog
  constructor for this dialog
allowResizing - Variable in class uchicago.src.sim.gui.DrawableItem
allowResizing(boolean) - Method in class uchicago.src.sim.gui.DrawableItem
  Should this DrawableItem be resized to so that entire label is visible.
allowResizing(boolean) - Method in interface uchicago.src.sim.gui.NetworkDrawable
  Sets whether or not this NetworkDrawable will be resized to fit its label.
allowResizing(boolean) - Method in class uchicago.src.sim.network.DefaultDrawableNode
  Sets whether or not this DefaultDrawableNode will be resized to fit its label.
ALPHA_ORDER - Static variable in class uchicago.src.sim.engine.AbstractGUIController
AlwaysCooperate - Class in uchicago.src.sim.games
AlwaysDefect - Class in uchicago.src.sim.games
amountOfChange(Chromosome) - Static method in class uchicago.src.repastdemos.genetic.MinimizingMakeChangeFitnessFunction
  Calculates the total amount of change (in cents) represented by the given potential solution and returns that amount.
anl.repast.gis - package anl.repast.gis
anl.repast.gis.data - package anl.repast.gis.data
anl.repast.gis.data.dbf - package anl.repast.gis.data.dbf
anl.repast.gis.display - package anl.repast.gis.display
AntiTitForTat - Class in uchicago.src.sim.games
AnyName() - Method in class uchicago.src.sim.parameter.rpl.RPLParser
appendToList(List) - Method in class uchicago.src.sim.gui.AbstractGraphLayout
  Appends a list of nodes to the current list of nodes to be laid out by this GraphLayout.
appendToList(DrawableNonGridNode) - Method in class uchicago.src.sim.gui.AbstractGraphLayout
  Appends the specified nodes to the list of nodes to be laid out by this GraphLayout.
appendToList(List) - Method in interface uchicago.src.sim.gui.GraphLayout
  Appends a list of nodes to the current list of nodes to be laid out by this GraphLayout.
appendToList(DrawableNonGridNode) - Method in interface uchicago.src.sim.gui.GraphLayout
  Appends the specified nodes to the list of nodes to be laid out by this GraphLayout.
areXYEqual(ObjectLocation) - Method in class uchicago.src.sim.space.ObjectLocation
  Returns true if the x and y coordinates of the specified ObjectLocation are equal to the x and y coordinates of this ObjectLocation.
ArgGenerator - Class in uchicago.src.codegen
ArgGenerator(String, String) - Constructor for class uchicago.src.codegen.ArgGenerator
ArrayListListModel - Class in uchicago.src.sim.engine.gui.components
ArrayListListModel(ArrayList) - Constructor for class uchicago.src.sim.engine.gui.components.ArrayListListModel
  Sep 7, 2004
ASCII - Static variable in interface uchicago.src.sim.network.NetworkConstants
ASCIIFormatter - Class in uchicago.src.sim.network
  Formats AdjacencyMatrices into a comma delimited plain text format.
ASCIIFormatter() - Constructor for class uchicago.src.sim.network.ASCIIFormatter
aspiration - Variable in class uchicago.src.repastdemos.enn.EnnBase
assign() - Method in class uchicago.src.sim.math.CEquation
  Assigns the result of the last call to `evaluate` to the result variable of the target specified in the constructor.
ASTblockdef - Class in uchicago.src.sim.parameter.rpl
ASTblockdef(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTblockdef
ASTblockdef(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTblockdef
ASTcompilationUnit - Class in uchicago.src.sim.parameter.rpl
ASTcompilationUnit(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTcompilationUnit
ASTcompilationUnit(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTcompilationUnit
ASTconst_assign - Class in uchicago.src.sim.parameter.rpl
ASTconst_assign(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTconst_assign
ASTconst_assign(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTconst_assign
ASTConstant - Class in uchicago.src.sim.parameter.rpl
ASTConstant(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTConstant
ASTConstant(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTConstant
ASTdotted_name - Class in uchicago.src.sim.parameter.rpl
ASTdotted_name(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTdotted_name
ASTdotted_name(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTdotted_name
ASTFalse - Class in uchicago.src.sim.parameter.rpl
ASTFalse(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTFalse
ASTFalse(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTFalse
ASTFloat - Class in uchicago.src.sim.parameter.rpl
ASTFloat(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTFloat
ASTFloat(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTFloat
ASTInt - Class in uchicago.src.sim.parameter.rpl
ASTInt(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTInt
ASTInt(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTInt
ASTlist - Class in uchicago.src.sim.parameter.rpl
ASTlist(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTlist
ASTlist(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTlist
ASTlist_assign - Class in uchicago.src.sim.parameter.rpl
ASTlist_assign(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTlist_assign
ASTlist_assign(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTlist_assign
ASTName - Class in uchicago.src.sim.parameter.rpl
ASTName(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTName
ASTName(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTName
ASTparam_assign - Class in uchicago.src.sim.parameter.rpl
ASTparam_assign(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTparam_assign
ASTparam_assign(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTparam_assign
ASTParameter - Class in uchicago.src.sim.parameter.rpl
ASTParameter(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTParameter
ASTParameter(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTParameter
ASTString - Class in uchicago.src.sim.parameter.rpl
ASTString(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTString
ASTString(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTString
ASTsubBlock - Class in uchicago.src.sim.parameter.rpl
ASTsubBlock(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTsubBlock
ASTsubBlock(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTsubBlock
ASTsuite - Class in uchicago.src.sim.parameter.rpl
ASTsuite(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTsuite
ASTsuite(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTsuite
ASTTrue - Class in uchicago.src.sim.parameter.rpl
ASTTrue(int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTTrue
ASTTrue(RPLParser, int) - Constructor for class uchicago.src.sim.parameter.rpl.ASTTrue
AsynchAgent - Class in uchicago.src.sim.engine
  An asynchronously executed agent class.
AsynchAgent() - Constructor for class uchicago.src.sim.engine.AsynchAgent
  Default creator, sets up this agent with a random distribution of type Uniform running on a MersenneTwister.
AsynchAgent(SimModel) - Constructor for class uchicago.src.sim.engine.AsynchAgent
  Default creator, sets up this agent with a random distribution of type Uniform running on a MersenneTwister and a model
AsynchAgentsModel - Class in uchicago.src.repastdemos.asynchAgents
  A model illustrating the use of the asynchronous agents and schedule.
AsynchAgentsModel() - Constructor for class uchicago.src.repastdemos.asynchAgents.AsynchAgentsModel
AsynchSchedule - Class in uchicago.src.sim.engine
  A subclass of schedule useful for asynchronous scheduling.
AsynchSchedule() - Constructor for class uchicago.src.sim.engine.AsynchSchedule
AsynchSchedule(double) - Constructor for class uchicago.src.sim.engine.AsynchSchedule
  Constructs a schedule that executes at the specified interval.
atEnd() - Method in class uchicago.src.sim.engine.SimpleModel
atPause() - Method in class uchicago.src.sim.engine.SimpleModel
autoRecording - Variable in class uchicago.src.sim.engine.BatchController
  whether or not the controller is automatically recording the parameters of the model
autoStep - Variable in class uchicago.src.sim.engine.SimpleModel
AutoStepable - Interface in uchicago.src.sim.engine
  This interface can be used for a more advanced stepping pattern for agents.
AverageDataSource - Class in uchicago.src.sim.analysis
  Dynamically computes the average of a list of values.
AverageDataSource(String, ArrayList, String) - Constructor for class uchicago.src.sim.analysis.AverageDataSource
  Constructs this AverageDataSource using the specified list and method name.
AverageSequence - Class in uchicago.src.sim.analysis
  Computes the minimum of a sequence of values, based on a list of objects and a method to call on them.
AverageSequence(ArrayList, String) - Constructor for class uchicago.src.sim.analysis.AverageSequence
  Constructs this AverageSequence using the specified list and method name.
avg(String) - Method in class uchicago.src.sim.engine.DefaultGroup
avg(String) - Method in interface uchicago.src.sim.engine.Group

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